2018
Identification of prognostic phenotypes of esophageal adenocarcinoma in 2 independent cohorts.

Sawas et al, 2018.

Gastroenterology

Organoid cultures recapitulate esophageal adenocarcinoma heterogeneity providing a model for clonality studies and precision therapeutics.

Li, Francies et al, 2018.

Nat Commun

Molecular landscape of esophageal cancer: implications for early detection and personalized therapy.

Talukdar et al. 2018.

Ann N Y Acad Sci

2017
Multicentre cohort study to define and validate pathological assessment of response to neoadjuvant therapy in oesophagogastric adenocarcinoma.

Noble et al. 2017.

Br J Surg

A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy.

Noorani et al. 2017.

Genome Res

2016
Mutational signatures in esophageal adenocarcinoma define etiologically distinct subgroups with therapeutic relevance.

Secrier, Li et al. 2016.

Nat Genet

Authentication and characterisation of a new oesophageal adenocarcinoma cell line: MFD-1.

Garcia et al. 2016.

Sci Rep

Whole-genome sequencing of nine esophageal adenocarcinoma cell lines.

Contino et al. 2016.

F1000Res

Signatures of mutational processes and associated risk factors in esophageal squamous cell carcinoma: a geographically independent stratification strategy?

Secrier and Fitzgerald. 2016.

Gastroenterology

2015
Molecular effects of Lapatinib in the treatment of HER2 overexpressing oesophago-gastric adenocarcinoma.

De Silva et al. 2015.

Br J Cancer

Whole-genome sequencing provides new insights into the clonal architecture of Barrett's esophagus and esophageal adenocarcinoma.

Ross-Innes et al. 2015.

Nat Genetics

2014
Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis.

Weaver et al. 2014.

Nat Genetics

Visualizing time-related data in biology, a review.

Secrier and Schneider. 2014.

Brief Bioinform

2013
PhenoTimer: software for the visual mapping of time-resolved phenotypic landscapes.

Secrier and Schneider. 2013.

PLoS One

2012
Arena3D: visualizing time-driven phenotypic differences in biological systems.

Secrier et al 2012.

BMC Bioinformatics

2011
How neurons migrate: a dynamic in-silico model of neuronal migration in the developing cortex.

Setty et al 2011.

BMC Syst Biol

Using graph theory to analyze biological networks.

Pavlopoulos et al 2011.

BioData Min

2009
The ABC of reverse engineering biological signalling systems.

Secrier, Toni and Stumpf. 2009.

Mol Biosyst